PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 411aa    MW: 44120.5 Da    PI: 8.4452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-112146126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtGtC yG++C+F+H+
  XP_011100472.1 21 PGEPDCLYYLRTGTCGYGSNCRFNHP 46
                    5789*********************8 PP

2zf-CCCH36.48.8e-126892327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C f+++tGtCkyG++Ck++H++
  XP_011100472.1 68 KPDCGFYLKTGTCKYGSTCKYHHPK 92
                    689********************96 PP

3zf-CCCH32.41.6e-10124146527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C+++++tG CkyG  CkF+H++
  XP_011100472.1 124 ACPYYMQTGLCKYGYACKFHHPQ 146
                     7********************97 PP

4zf-CCCH37.24.8e-12248272226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++  G CkyG++CkF+H+
  XP_011100472.1 248 DQPECQYYMNHGSCKYGSNCKFHHP 272
                     689*********************8 PP

5zf-CCCH33.76e-11295318326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C++++ +G CkyG++CkF H+
  XP_011100472.1 295 LPVCSYYSLYGLCKYGPTCKFDHP 318
                     589********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4642048IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-62047IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-92246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-62548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-52645IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7466593IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-56692IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-96892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-67093IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-47192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7118147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751119147IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5120146IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8123146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4123145IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042246274IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9248272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7248276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5252272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014292320IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7292319IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8295318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4297317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGSDDNGGV GDDRGLFPDR PGEPDCLYYL RTGTCGYGSN CRFNHPSNAG GQVHGVKNTS  60
ELPERAGKPD CGFYLKTGTC KYGSTCKYHH PKDRQGDNRP KDSKPDSLIL LNILGLPMRQ  120
DGKACPYYMQ TGLCKYGYAC KFHHPQPTSA ANVLPVVGPV YGSGASAVAP SSGAPSVGEI  180
PAPTLPKATY FSSSLLHVPQ SYMPIILSPS QGWNTYTGSV SPLSVTSVLT APASDGQLPV  240
PYLPQRPDQP ECQYYMNHGS CKYGSNCKFH HPIKKITQLP PSSLGPLGLP LRPGLPVCSY  300
YSLYGLCKYG PTCKFDHPLD GYAYAYSLSV PPLSAPYSPS SPYQSTSSLA PSSETSPSKP  360
SKLNDWIKKG VPASNKSRHS NTKSGRDSPD VSDSQPRSSK TSSEIMQNES D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100471.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A022RSU51e-158A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-147(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-73C3H family protein